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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on …
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Natural Prodcast Episode 6: Marc Chevrette
… where, among lots of other things, he works on the Tiny Earth project, which you’ll hear him describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … a year. And that was those numbers were quoted a couple of months ago. We’re always growing. So those are probably out …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: the 50th celebration …
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Natural Prodcast Episode 19: Bill Fenical
… things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … long time, he said, guess what, I’m going to give you nine months of salary and a lousy job with no future. And let’s … ALISON TAKEMURA: Does inhibiting this proteasome damage healthy cells as well? I mean, I guess, how does that affect …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … processes, development of high performance plants and microbes, and understanding microbiome interactions. The  … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene …
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FICUS
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … his lab when he was at University of Arizona. And I think a month later, we packed up and moved to SIO, UCSD. So I was … of Utah , about her secondary metabolism research on novel microbes and bioactive compounds in the Great Salt Lake. …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … completion of work on all approved proposals within 36 months from the approved start date. Additional time …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … capture atmospheric carbon, helping to regulate Earth's carbon balance, to exploring the genetic basis of … Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a …
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Environmental Genomics Group
… and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … . Research Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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