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Who We Are
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … in Berkeley, California.  Our location at the IGB fosters team science and collaboration with partner organizations … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric genomic science user …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … microbiome structure and biogeochemical cycles. Research Team    … challenge our understanding of viral complexity and evolution Our research focuses on discovering and characterizing …
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Plant Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … understand the plant-associated terrestrial world. Research Team    … whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified resident …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … hosted within the Environmental Genomics group . Research Team … measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of … of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a … Synthesis Program plays a central role in advancing functional genomics, focusing on developing genetic systems that …
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Project Management Office
… The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … Please review our FAQ in advance of contacting the PMO office.  …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network (ESnet) have been … microbiomes.” JGI’s Chief Informatics Officer  Kjiersten Fagnan touted the long-standing collaboration between JGI … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are … of cultivated bacteria, still persists to date. Research Team    …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has … access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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