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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users … like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to accelerate scientific discovery, … process including peer review. The process is streamlined, with defined deadlines and straightforward submission steps.  …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … More genome copies in switchgrass leads to increased climate flexibility …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a … and health. This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can …
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Natural Prodcast Episode 8: Eric Schmidt
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring … to uncover the complex interactions and functions that shape ecosystems. By decoding the microbial DNA in …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … Plant Datasets … Fungal Datasets …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … Plant Datasets …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in length, while the previous version had an average of 25,000 bp pieces. That’s the difference between assembling a …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in … opportunities and ultimately, an understanding of the JGI’s role in enabling complex biological and environmental …
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