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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell types and associated … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very …
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Who We Are
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … location at the IGB fosters team science and collaboration with partner organizations such as the DOE Systems Biology …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable …
Learn more
Natural Prodcast Episode 8: Eric Schmidt
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM … activities in this space.         Special Outreach Initiatives: … The JGI and UC Merced have had a long-standing … JGI-UC Merced internship program, a similar collaboration with AAMU was launched in 2024.  … The CalTeach Summer …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in length, while the previous version had an average of 25,000 bp pieces. That’s the difference between assembling a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING … call Check back Spring 2026 for the FY27 call Sept. 9, 2025 Jan. 29, 2026 Review Date June 2025 August 2025 November …
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