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Natural Prodcast Episode 11: Marnix Medema
… efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … being post-translationally modified into ribosomally synthesized peptide natural products. And they built a few of … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated …
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Synthetic Biology Lab
… the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those involving biosynthetic … methods for converting digital information from sequence databases into biotechnological or environmental …
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Frequently Asked Questions: Project Management
… via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: https://doi.org/10.1093/nar/gkaa939 … functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal …
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JGI Portals
Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing … and their associated metadata, around the world. … The IMG/M system serves as a community resource for comparative … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection …
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Microbiome Data Science Team
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Science   355(6322):294-298 Paez-Espino D. et al. (2017) IMG/VR: a database of cultured and uncultured DNA Viruses and …
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Partnerships: Adopt-A-Genome
… biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization … … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and … to enable comprehensive comparative analysis. Importantly, IMG/M provides data and tools via a graphical user …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and … did the scope of the project.” To this end, Kyrpides emphasized, the contributions of the numerous JGI science users …
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Environmental Genomics Group
… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct …
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IMG: the integrated microbial genomes database and comparative analysis system
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … the promiscuity of one of the previously best studied SVR receptors. And so previously, a lot of these have been … can activate these, utilizing some of these already synthesized molecules. DAN: OK. These receptors are coming from …
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Natural Prodcast Episode 15: Katherine Duncan
… in the terms biosynthetic gene clusters and genome size. And they’re so complex. There’s so much still to … gene clusters of those.And they’re just like nothing in databases that currently exist. We looked at chemistry, so … something new? And we could only do this by comparing it to databases that were quite often commercial, that were quite …
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Mission
… and contributing this information freely to the public databases. In 2004, the JGI established itself as a national … mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to the JGI as …
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