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Natural Prodcast Episode 3: The Primer, Part 3
… depending on which term you prefer. In this episode we’re going to finish up by talking about the modern, post-golden … I said in the intro to the first episode , after this we’re going to be spending some time talking some great … but we’ll have to do some technology development to try to improve that. Like we talked about, some of these things are …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are … microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers described …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com . And then … home, not back at school. So, yeah. So there’s been a lot going on. But Natural Prodcast needs to come back, right? … if you find little pieces, you know that there are probably going to be big pieces somewhere, right? The National Park …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … responsible for coming up with new strains and new process improvements and new ways to recover spinosyns. And so we … firstly set up a baseline process. And then really dig deeper into both aspects of the strain, as well as the …
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Natural Prodcast Episode 12: Nadine Ziemert
… these biosynthetic gene clusters. There’s gene fusion going on, and then I could see how the pathway gets … by really digging into the data and understanding what’s going on there. And now, that’s all I want to do. I don’t … ideas on how to do that tomorrow, because it does take some improvements on things. So from your perspective on genome …
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Accelerating Metagenomics Discoveries with Deep Learning
… with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or … workshop aimed to showcase how researchers are utilizing deep learning to automatically generate insights from … computational work at the JGI. Sevim’s work is part of an ongoing effort to build greater collaboration between JGI and …
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Synthetic Biology Lab
… combinatorial libraries.  We have developed and continue to improve automated assembly pipelines bringing in new …
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Examples: Successful LOIs & Submissions
… … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … Adaptive …
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A Collaboration to Improve Plant Genome Annotations Across Species
Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI … 17 research groups. The team set out to characterize the transcriptome – the complete set of RNA molecules … spanning diverse plant species. It was developed to improve plant genome annotations at the US Department of …
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De novo Nanopore read quality improvement using deep learning
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Digging into Microbial Ecosystems Deep Underground
… have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI …
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Natural Prodcast Episode 15: Katherine Duncan
Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … excited! Lots of my favorite areas there, so I’m sure I’m going to have fun. Dan Udwary: Super. Alison Takemura: All … that there has been quite a lot of work in recent years to improve gender equality of people entering science programs. …
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