Search

… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … talked about at the JGI meeting. DAN UDWARY: What’s your gut feeling about that sampling? Do you find different … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the …

… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …

… Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … at Scripps Institution of Oceanography. He got me into genomics of microbes, specifically of some that lived in the …

… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … bacteria so what’s – I guess that maybe you could say the gut is, kind of. But not the same way this is designed … to do some really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s …

… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating to me. Maybe … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …

… The central mission of the JGI’s Genomic Technologies department is   ensuring users have … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, metabolomic, … needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …

… sample processing and sequencing capabilities. The Genomic Technologies Group, which includes the Sequencing … focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    …

… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … And I think another key component is data integration with genomics with metabolomics and with transcriptomics because …

… I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … flowing– water flows into them and floods them on a regular basis. So they are full of terrestrial microbes. So they’re … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …