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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … And you know, 25 hours a day we’re at the beach practically. It was just – it was sort of our place to be. And … are going to happen, that become toxic, and be able to better, perhaps, inform the public when a toxic event is …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … the Bilateral DOE Laboratory Utilization Agreement specifically for the JGI’s DNA Synthesis Program has been …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through … conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted at any …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … international meeting on natural products, but as a new, I call it “incarnation”, for this series of meetings. It’s … JGI to try to find new enediyne clusters and to figure out better ways to produce them. Do you want to talk a little …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Lab) describe a computational pipeline that can specifically scan for those snowflakes, or RNA virus sequences. …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … of people know who are not specialists, but they’re also called (unfairly) sea squirts, because if you kill them and … changing these properties, you can make compounds that are better antibiotics, for example, that are more stable to …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … Hey, Dan. DAN UDWARY: So I guess this is now– we’ll call this the second season of Natural Prodcast. We’ve both … those results heading? Toward an application, toward just better understanding fungal biosynthesis? DAN UDWARY: Yeah, …
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Natural Prodcast Episode 3: The Primer, Part 3
… to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces in Nature and Medicine.” It’s … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … how these systems evolve. ALISON: And we want to be able to better understand how these particular secondary metabolites …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as target … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … and his JGI colleagues have developed a technology called chassis-independent recombinase-assisted genome …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New … documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic …
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