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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … what we’re calling a Primer. We wanted to try and give a general audience some of the basics of natural products … a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps purpurea, can infect …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … is the chemistry produced by actinobacteria and what influences that. Dan Udwary: I want to point out, too, that …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … spheroides . And that got me really interested in microbial gene regulation and some pathways. And I thought I’d take an …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … aims for bioenergy feedstock crops are increasing their yields and improving their abilities to adapt to extreme …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a year, a full gene cluster would come out. And it was a very exciting …
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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from the mitochondria into the nuclear … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we … It’s an evolution of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … antibiotic is really an antibiotic in nature, what is the general belief is that that is the case when there is a …
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Roadmap for Accelerated Domestication of an Emerging Perennial Grain Crop
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Genome interplay in the grain transcriptome of hexaploid bread wheat
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