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… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … ‘omics methods. Here we were able to capture both plant and fungal expression patterns in root cross-sections. …

… contributions, ensure that all contributors to a research project are appropriately recognized and credited for their … such efforts should specify the collaborative nature of the project. Journal policies typically expect authorship to … all users with a list of JGI staff who contributed to their project, using the CRediT taxonomy ( credit.niso.org/ , with …

… is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into …

… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … bioproduct applications. The program has completed over 70 projects, including gene synthesis, combinatorial pathway … to refactor entire chromosomes, such as a yeast chromosome project. These advancements contribute to the development of …

… or differential gene expression results. For DNA synthesis projects, JGI ships physical materials like expression … charge for non-proprietary research; the vast majority of projects fall into this category. Users are responsible for … costs. The cost of standard incidentals related to the user project (such as chemicals, basic lab supplies, office …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … Dothideomycetes genomes were conducted as part of the 1000 Fungal Genomes Project supported by the JGI Community …

… Berkeley Lab Biosciences Area on a Strategic Partnerships Project to study how methanotrophs — a class of microbes … Through a Strategic Partnership Project, the JGI Metabolomics Technology Group helped the … Strategic Partnership Projects … collaborators, working closely with user companies from project conception, sample processing and data analysis. Our …

… with isolate collections to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … Projects and Initiatives …

… fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning …

… Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … to find any new genomes, new areas or regions or loci, that encode for new, truly chemical dark matter BGCs. That’s the … in partnering with us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, …

… other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … partnerships. To learn more about these other plant-fungal relationships, an international team led by graduate … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …

… to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … Projects and Initiatives …