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… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …

Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing … integrated context. IMG/M provides tools for analyzing the functional capability of microbial communities based on … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …

Plants are complex organisms that harbor a fantastic … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …

… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … that morning cup of coffee, that is a plant that has a functional activity. It’s a pharmacological agent that acts …

… the JGI to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, …

… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected as based on a specific functional trait or phenotype of interest, prior to and in …

… help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina …