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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … with geNomad. Nat Biotechnol . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse …
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Approved Proposals
… view a downloadable pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as well as the …
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Natural Prodcast Episode 9: Roger Linington
… Microbiology conference that took place in January this year in San Diego, and that city is where I first met Roger, … Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … published literature for the past hundred years and identify every article which describes the discovery of a …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… can we utilize sequences of these TetRs to identify what molecule might bind them and then allow for their … so that's a new JGI project. Just came out from a CSP this year. BETSY PARKINSON: Yes. DAN: So how long do you expect … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …
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Natural Prodcast Episode 17: Cassandra Quave
… has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … And so a path opened itself to me, just before my senior year of college, a chance to go to the Amazon and work with … they were starting to show the ability to really identify, and get crystal structures out of these mixed powders, …
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Frequently Asked Questions: Project Management
… Go to the “ edit contacts ” page in your account. Use the form to update all information … by contacting the collaborator listed on the “info” page for that organism on the Genome Portal . … the reports by searching for projects in the portal search page and then clicking the blue “reports” button on the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready for the public to … about natural products. So in Brad’s lab, I worked on identifying and characterizing haloperoxidases from bacteria. And … you go to the website, which is smc.jgi.doe.gov , the stats page is showing me that right now we have just over a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you … try to understand the biosynthetic pathway or to help identify the compound that they were interested in. But nowadays, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different …
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Natural Prodcast Episode 8: Eric Schmidt
… the amazing John Faulkner’s work, who passed away about 17 years ago now. It looked really interesting. He was … them. And so there’s a long history. There’s, I think, 60 years of history now of people looking at sponge chemistry … for the last 10 years in this area. ALISON:  Just a clarifying question, like small molecule versus peptide. It’s the …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a …
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Natural Prodcast Episode 19: Bill Fenical
… of the research that you’ve been doing the last couple of years. And I really want to make sure that we talk about … But thankfully that worked out. And I spent 30, 40 years diving all over the world and bringing samples into … seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, …
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Natural Prodcast Episode 12: Nadine Ziemert
… ALISON TAKEMURA: And this is Paul Jensen in the early 2000s? Late 2000s? NADINE ZIEMERT: No, yeah, 2010. ALISON … I mean, I am– yeah. I just got the position like three years, four years– four years ago I think. Yeah. Yeah, Paul … tools for natural product researchers that easily can identify secondary metabolite pathways in metagenomes, which is …
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