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… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow … .  Nature Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, …

Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed … with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses …

Microbiology conference that took place in January this year in San Diego, and that city is where I first met Roger, … published literature for the past hundred years and identify every article which describes the discovery of a … internally by making a list on the whiteboard of the top 50 journals that we thought were most likely to contain …

… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … by contacting the collaborator listed on the “info” page for that organism on the Genome Portal . … You can view … are released to the public via JGI portals and the NCBI a year after generation.  Read More about our policies. … …

The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations … Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …

… chemical biology, a lot of which people classify as tool building. So I worked with a really great guy … AARON PURI: Sure. Great. I have a job for a couple of years. But the other thing that we can do that we’ve been … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …

… of the research that you’ve been doing the last couple of years. And I really want to make sure that we talk about … FENICAL: I had begun diving when I was a teenager, about 15. I grew up in Northern California. And we’d go down to … seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, …

… the amazing John Faulkner’s work, who passed away about 17 years ago now. It looked really interesting. He was … them. And so there’s a long history. There’s, I think, 60 years of history now of people looking at sponge chemistry … for the last 10 years in this area. ALISON:  Just a clarifying question, like small molecule versus peptide. It’s the …

It was actually when I was traveling at the end of first year University. Quite a lot of people in Europe do this … like. I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …

Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready for the public to … about natural products. So in Brad’s lab, I worked on identifying and characterizing haloperoxidases from bacteria. And … you go to the website, which is smc.jgi.doe.gov , the stats page is showing me that right now we have just over a …

… has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … And so a path opened itself to me, just before my senior year of college, a chance to go to the Amazon and work with … they were starting to show the ability to really identify, and get crystal structures out of these mixed powders, …

… out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. … try to understand the biosynthetic pathway or to help identify the compound that they were interested in. But nowadays, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different …