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Microbiome Data Science Team
… bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and …
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Publication Policy
The publications resulting from such efforts should specify the collaborative nature of the project, and authorship … Proposal DOIs can be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the … products produced through all user projects accepted FY22 and later. … Read about our policy on research data and …
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Natural Prodcast Episode 9: Roger Linington
Microbiology conference that took place in January this year in San Diego, and that city is where I first met Roger, … published literature for the past hundred years and identify every article which describes the discovery of a … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the …
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University of California, Merced Internship Program
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Natural Prodcast Episode 24: Jackie Winter and SMC
Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready for the public to … about natural products. So in Brad’s lab, I worked on identifying and characterizing haloperoxidases from bacteria. And … you go to the website, which is smc.jgi.doe.gov , the stats page is showing me that right now we have just over a …
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Natural Prodcast Episode 15: Katherine Duncan
It was actually when I was traveling at the end of first year University. Quite a lot of people in Europe do this … like. I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …
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Natural Prodcast Episode 19: Bill Fenical
… of the research that you’ve been doing the last couple of years. And I really want to make sure that we talk about … seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, … convince those people of that fact, however, a long time, 10 years! ALISON TAKEMURA: Wow. It’s all happened so fast. I …
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Natural Prodcast Episode 8: Eric Schmidt
… the amazing John Faulkner’s work, who passed away about 17 years ago now. It looked really interesting. He was … But, say, the last time I checked, it was on the order of 10,000 species. And whenever you’re talking about a new … for the last 10 years in this area. ALISON:  Just a clarifying question, like small molecule versus peptide. It’s the …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   … are released to the public via JGI portals and the NCBI a year after generation.  Read More about our policies. … …
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Environmental Genomics Group
… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Partnerships: Myco-Ed
Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed … Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host population diversity as a driver of viral …
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