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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the …
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Viral Genomics Group
… interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria … biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome …
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Special Initiatives & Programs
… request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls … seeks to reduce U.S. gasoline consumption by 20% within 10 years through increased efficiency and diversification of …
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Environmental Genomics Group
… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE … Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … by contacting the collaborator listed on the “info” page for that organism on the Genome Portal . … You can view … are released to the public via JGI portals and the NCBI a year after generation.  Read More about our policies. … …
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Natural Prodcast Episode 9: Roger Linington
Microbiology conference that took place in January this year in San Diego, and that city is where I first met Roger, … of the undergraduate degree, there was a chance to do a year in industry. And in many ways, that was the best part … published literature for the past hundred years and identify every article which describes the discovery of a …
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Natural Prodcast Episode 15: Katherine Duncan
It was actually when I was traveling at the end of first year University. Quite a lot of people in Europe do this … like. I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …
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Natural Prodcast Episode 20: Brian Bachmann
… we are today, recording today. BRIAN BACHMANN: Yeah, in the year 2000. And I was trying to figure out what to do with … how much blood, sweat, and tears went into trying to identify that you had the right cluster before you sent it out for … Nikolaou synthesized the everninomicin at Scripps, I guess, 22 years ago. And it’s over 130 steps to make everninomicin. …
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Natural Prodcast Episode 8: Eric Schmidt
… the amazing John Faulkner’s work, who passed away about 17 years ago now. It looked really interesting. He was … them. And so there’s a long history. There’s, I think, 60 years of history now of people looking at sponge chemistry … for the last 10 years in this area. ALISON:  Just a clarifying question, like small molecule versus peptide. It’s the …
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New Lineages of Life Group
… genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of … Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of protective tricks. Nature …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… try to understand the biosynthetic pathway or to help identify the compound that they were interested in. But nowadays, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different … this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about NRPS’s …
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Natural Prodcast Episode 17: Cassandra Quave
… has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … And so a path opened itself to me, just before my senior year of college, a chance to go to the Amazon and work with … they were starting to show the ability to really identify, and get crystal structures out of these mixed powders, …
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