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Viral Genomics Group
… interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria … biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome …
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Environmental Genomics Group
… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … by contacting the collaborator listed on the “info” page for that organism on the Genome Portal . … You can view … are released to the public via JGI portals and the NCBI a year after generation.  Read More about our policies. … …
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Natural Prodcast Episode 9: Roger Linington
Microbiology conference that took place in January this year in San Diego, and that city is where I first met Roger, … of the undergraduate degree, there was a chance to do a year in industry. And in many ways, that was the best part … published literature for the past hundred years and identify every article which describes the discovery of a …
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Natural Prodcast Episode 15: Katherine Duncan
It was actually when I was traveling at the end of first year University. Quite a lot of people in Europe do this … like. I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …
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Natural Prodcast Episode 8: Eric Schmidt
… the amazing John Faulkner’s work, who passed away about 17 years ago now. It looked really interesting. He was … them. And so there’s a long history. There’s, I think, 60 years of history now of people looking at sponge chemistry … for the last 10 years in this area. ALISON:  Just a clarifying question, like small molecule versus peptide. It’s the …
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New Lineages of Life Group
… genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We … Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual intracellular niche: a bacterial …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… try to understand the biosynthetic pathway or to help identify the compound that they were interested in. But nowadays, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different … is another community effort that’s been built up over the years and is really strong for finding lots of different …
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Natural Prodcast Episode 17: Cassandra Quave
… has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … And so a path opened itself to me, just before my senior year of college, a chance to go to the Amazon and work with … they were starting to show the ability to really identify, and get crystal structures out of these mixed powders, …
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Single Cell Research Group
… trajectory of microbial single-cell sequencing. Nat Methods 14(11): 1045-1054 (2017). Schulz F., Yutin N., Ivanova N. … for new branches on the tree of life. Science. 346:698-9 (2014). Ivanova N.N., Schwientek P., Tripp H.J., Rinke C., Pati … codon reassignments in the wild. Science 344, 909-13 (2014). Rinke C., Schwientek P., Sczyrba A., Ivanova N.N., …
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … was at the Broad Institute in Cambridge, Mass. for a couple years before joining Warp Drive. And what kind of pushed me … to be involved in signaling. We’re not perfect at identifying what these pathways are yet. So there’s still a lot to …
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Natural Prodcast Episode 7: Ben Shen
… as a new type of medicine that will open up a new year for targeted anti cancer drug discovery. DAN: Yeah, … drug conjugates, abbreviated as “ADC”, was approved in the year 2000, and utilize the enediyne as the payload. We call … if you are a microbiologist in the 40s, how do you classify a strain? You look at it and this is the 40s – you don’t …
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