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… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … as tool building. So I worked with a really great guy named Matt Bogyo in grad school synthesizing activity based probes … community. For us, it’s these methane oxidizing bacterial communities that we like to look through as a lens, and …

… a Genome Insider listener, then you’ll recognize this material, though my show is a little more free-form, and … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … We don’t want to get a proposal that’s just asking for 20 microbial genomes. That is not a good fit for our annual CSP …

… interactions, the exploration of the functional dark matter as well as the development of novel methods to enable … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. …

… on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): …

… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … processes and the bioeconomy including understanding enzymatic transformations, pathways, and how changes in … to analyze metabolites in environmental organisms, communities, and samples including state-of-the-art …

… still not, probably, 50-50 in things like physics and maths– but there’s actually more women than men in life … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … of new chemistry, and we want to understand the antimicrobial-resistant era, we need new chemistry. If we want …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … … GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing projects, … tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …

… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  MARCY: Yes. So I would … at this point. But the squid is probably the most charismatic of those. And pretty it’s really quite intriguing. The …

… to find new antibiotics. And, as many projects in bioinformatics, what, something that was born out of frustration in … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …

… group. The group performs custom analysis and develops automated pipelines for analysis of resequencing, transcriptome, …