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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … you would go up and down the stream, and you would find places where there might be little flecks of gold. You had … but then there will be a couple of genes in there where the light bulb will go off, and you’ll understand, oh, those …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … one that the Hawaiian bobtail squid is famous for is the light organ.  And the light organ houses Vibrio fischeri, … now in the not quite in the Arctic but in Alaska in these polar regions. And I think that there’s potential but I …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … types of enediyne molecules can bind to different places, but then the ring opening can cause all kinds of crazy … right? That’s the flavor of monoterpenoids. The very light natural product that gives you this fresh scent of the …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … I’d never poured a Petri dish. I didn’t know what a thermocycler looked like. I was imagining some massive contraption … this. And then you’re biasing your chemistry viewpoint by polarity. And you’re only getting a subset of the chemistry …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … tundripaludum is my favorite and is again, maybe highlighting the people-centric aspects of the broader field and … not going to be able to make enough to adhere to your surface. And so you’re going to have a huge fitness disadvantage …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … of her work, including bacterial quorum sensing and its effects on regulation of natural product biosynthetic … other-- DAN: True. BETSY PARKINSON: --aspects of the life cycle, but we're just particularly interested in their …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle times from sample receipt to completion of standard … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … to help them solve those problems. It’s a fantastic place to work, and this is the best job I’ve ever had. So, ok, … pathways of pink and teal, and Dan pointed out the Krebs cycle to me earlier – I kind of see it. DAN: So what we’ve …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … sponge chemistry and looking for active compounds and pharmaceuticals. ALISON:  Okay, and he was looking at how the … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals …
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