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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … JGI Staff: Upon request, JGI staff will provide Users with a list of contributors and their corresponding ORCiD and relevant … As part of JGI’s production workflows, many staff are involved in …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … challenges in resource resilience and economic growth. The DOE, through its BER program, plays a central role in … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  Submit … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … leading industry and academic organizations with the DOE, National Laboratories, and User Facilities — as well as …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … & quality requirements for samples submitted to the DOE JGI. DNA Preparation Guidelines RNA Preparation …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … what are you going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a … the annual CSP call. That call is supposed to come out in early next year. Same for the FICUS, we’re working with EMSL …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique …
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Frequently Asked Questions: Project Management
… Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including a downloadable …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER … Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is not … long as they have a scientific question that is relevant to DOE missions.  Learn more about this opportunity . …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, …
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