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… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … bacteria into the jelly coat to protect the eggs as they’re developing over about a month.  DAN: What are those bacteria … not dive to collect the marine tunicates, which was nice because it’s also cold. And so we waited until this …

… all the download numbers. And so one of the things I’ve noticed is that whenever it’s me or whenever we’re talking … bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …

… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … metabolite compounds. To support users, our efforts include developing computational tools for predicting biosynthetic …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … to be big pieces somewhere, right? The National Park Service has a great writeup on the kind of gold mining Dan is …

… of California San Diego. I walked into the director’s office, asked him if I could speak to him. And I said, you … local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … it too had something unusual that we began thinking about developing. And the company, Nereus, of course, which we …

… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … as soon as possible. So I ended up in Paul’s lab, and I noticed that this was a perfect fit for what I wanted to do. … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… listening to this podcast. And Alison has done a really nice job of providing that general scientific audience … access the chemical potential of these or any organisms. So developing good heterologous expression hosts like maybe in … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …

Uncovering associations between plant roots and fungi that can help or harm plant host … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … bioenergy feedstock crops. Summary A plant is like an office building, its roots are akin to the ground floor lobby. …

The JGI Project Management Office carries out a number of activities to facilitate … … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

… address, click the “Request email change” link. This will generate an email that will go to an administrator to … If you have concerns about shipping your DNA/RNA on dry ice, Gentegra products may be appropriate alternatives. See … Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: …

To provide broad plant genomic capabilities, the DOE Joint Genome Institute … led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … to the overreliance on a few species like Arabidopsis or rice as homology models for computational function …