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… The JGI’s Microbial Program focuses on using cutting-edge … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial …

… proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … to the user. Most users of the Molecular Foundry work side-by-side with our scientists at Berkeley Lab. Access to the …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of …

… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … effort to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral … The work conducted by the U.S. Department of Energy Joint Genome Institute is …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …

… The JGI’s Metabolomics Program works to uncover the roles of … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, …

… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …

… The JGI has diverse capabilities in: DNA and RNA sequencing, … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language …

… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … research project are appropriately recognized and credited for their work, while also adhering to the authorship … is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users …

… Science Program , or CSP, which is the main mechanism by which users work with our facility to do science. Since I … for you or thousands metagenomes. And I think also the quality that we provide. So for fungal and for a lot of our … to develop the statement of work, which is really just defining the entire project scope from beginning to end. So, …