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… high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … Click to learn more.   … SPPs enable research funded by an Industry partner to perform a defined scope of work … carbon emissions to make fuels and chemicals, improving air quality and promoting a circular economy. Acetogenic  …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …

CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … effort to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral …

… using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …

The JGI’s Metabolomics Program works to uncover the roles of … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the Metabolomics …

Science Program , or CSP, which is the main mechanism by which users work with our facility to do science. Since I … for you or thousands metagenomes. And I think also the quality that we provide. So for fungal and for a lot of our … to develop the statement of work, which is really just defining the entire project scope from beginning to end. So, …

Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral …

… computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based on their pairwise AF and ANI … extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to …

… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … hard it was – it felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have …

… to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … within the user community. … The SAC is a board convened by the JGI Director to provide a scientific and technical … strategy, operations, and scientific relevance and quality. … The DNA Synthesis Science Advisory Committee is …