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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater
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Examples: Successful LOIs & Submissions
… from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at …
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Natural Prodcast Episode 11: Marnix Medema
… take the 100, 200 most important protein domains that are defining for biosynthetic pathways and let’s split these … we, for example, are really interested in metagenomes and microbiomes and figuring out which gene clusters are responsible for phenotypes that are caused by microbiomes. And what are the functions of these gene …
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Cataloging the Microbes that Manage the Health of River Systems
… and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … University researchers led a consortium to study river microbiomes. To understand the microbiology of watershed … access points for these datasets. As part of a larger microbiome data integration hub, these datasets are …
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An Integrated Dataset to Understand Ecosystem Interaction
… first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … No. DE-AC02-05CH11231. The work conducted by the National Microbiome Data Collaborative ( https://ror.org/05cwx3318 ) … JGI Genomes Online Database … BioScales project on National Microbiome Data Collective … First-of-its-kind integrated …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … of the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes … Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the …
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Cultivating the Bacterial Microbiota of Populus Roots
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Environmental Genomics Group
Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. doi: …
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Partnerships: Adopt-A-Genome
… public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … and distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we … sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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