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Natural Prodcast Episode 18: A CSP Primer
… for you or thousands metagenomes. And I think also the quality that we provide. So for fungal and for a lot of our … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the annotate, …
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New Lineages of Life Group
… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual intracellular …
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Partnerships: Adopt-A-Genome
Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU … to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In … using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …
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Natural Prodcast Episode 14: Nigel Mouncey
… natural products for agriculture, and his upcoming new role as the Society for Industrial Microbiology and … a lot of sequencing capacity. And if people can get us good quality DNA, we can whip them through pretty quick.  DAN: So … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Natural Prodcast Episode 19: Bill Fenical
… this an awfully long time ago, and she’s been in her new job for a long time now, but I guess you all might not … from NCI and other programs, we started showing real drug quality in [our] molecules. And that continued on for a … this project too. I’m really looking forward to seeing the data when it finally gets off the sequencers. The pandemic …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … been quite a lot of work in recent years to improve gender equality of people entering science programs. So actually, …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … it worked pretty well. DAN UDWARY: No, they were very high quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, …
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Natural Prodcast Episode 7: Ben Shen
… schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … together a fantastic program. So I’m looking forward to the next couple of days. Yeah, yeah. So you are at the Scripps … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Partnerships Development Team
Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement … and other resources at the JGI for projects of relevance to Department of Energy missions. Click to learn more. … carbon emissions to make fuels and chemicals, improving air quality and promoting a circular economy. Acetogenic  …
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Natural Prodcast Episode 4: Nancy Keller
… example of probing fungi for natural products and finding new things. And so, really happy to have you here. And … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … look at and how much difference you need to have on cluster sets that are sort of the same. You know, family clusters, …
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Natural Prodcast Episode 5: Brad Moore
… know a lot of people sort of veer off and go into different directions. Brad: Absolutely. You know, my father Richard … moved there in the early ’60s from Berkeley to work on this new budding field of marine natural products. And was at the … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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