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… Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. Supported by the DOE Office of Science's …

… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial … SAR324 on IMG/M Data portal … tools designed for analysis of DNA and RNA sequence data.  …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief …

… is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s Data Policy . In cases where the JGI provides customized …

… There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… . You can find additional webinars covering how to use our data portals here.  …

… algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the … pipelines for that. So again, we don’t just give them the data output, but we tell them which genes may be affected by …

… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a … came from. So we wanted this to be a more comprehensive data portal for BGCs, biosynthetic gene clusters, that came …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at … that we’ve put together to try and create an open source database of all known microbial natural products. So if you …

… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … lot of information out there is not easily searchable or in databases, where you can easily get information. Usually, in …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only … portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve …

… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function … imaged and sampled.  Combining collected metabolomics data with genomics, transcriptomics, imaging, and other data …