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… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … of molecules can be thought of as signals or have other functions depending on their concentration and their … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …

… bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … products is that we don’t know what all the biosynthetic gene clusters look like.  DAN: For sure.  MARCY: We have so … on increasing computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product …

… energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in their natural … applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … via IMG/VR and methods to capture  environmental viral populations. Enabling microbiome data science:  The JGI …

Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into …

Microbes drive critical ecosystem functions and affect global nutrient cycling, however they … Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing …

… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the …

…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need … genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …

… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … the JGI? … If I have ongoing research funding to carry out functional studies using the proposed sequencing data, …

… and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation … Island. And was working on a natural products/biosynthetic gene cluster database, and a tool for predicting natural …

Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters …

… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … was the Salinispora genome project. And that was a JGI CSP project. They sequenced that genome for us at a time …