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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of microbial …
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. … technologies have expanded viral diversity knowledge, enabling global exploration. We develop computational tools …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed …
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other … cycle, helping researchers optimize genetic systems. By enabling these cutting-edge approaches, the program supports …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … And I really dove into microbial physiology and microbial genetics, and really away from chemistry and synthesizing … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… me to ask you about SMC and– DAN UDWARY: Yeah, I guess we reverse it, right? You can interview me, and otherwise, I’m … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … a ton of things that I know that we want to do in terms of enabling more comparative analysis and especially the …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … Yeah, so that's a new JGI project. Just came out from a CSP this year. BETSY PARKINSON: Yes. DAN: So how long do you …
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Scientific Advisory Committee
… and strategic objectives of the JGI. The SAC serves as the Institute's key external advisory panel and advocate of the … at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects …
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Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
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