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DNA Synthesis Program
… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … … DNA Synthesis Program in Detail … Projects and Initiatives … DNA Synthesis Program Head … Resources and …
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … and propagate annotations across fungi. Myco-Ed Genomics Initiative   engages students in environmental sampling of …
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Frequently Asked Questions: Proposal Submission
… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … favorite topic in, arguably, my area of expertise, which is genome mining. You’ll hear us talk about what it is, hear me … JGI paper that’s just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … us launching our second metabolites group, we launched an initiative at JGI which is really a pilot in bringing … Non-model Bacteria Check out the agenda for the JGI’s 2021 Annual Genomics of Energy & Environment Meeting   …
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Microbial Program
… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Database … Microbial Program in Detail … Projects and Initiatives … Microbial Program Head … Resources and Tools …
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Partnerships Development Team
… industry engagement through three primary routes:  … The CSP provides the scientific community at large with access … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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Products
Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact …
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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