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Frequently Asked Questions: Proposal Submission
… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and international applicants from any institution type and at any career stage. … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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Single Cell Research Group
… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …
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Mission
…     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All the … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … and growth to develop new bioenergy feedstocks with traits tailored for bioenergy and bioproduct development. …
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User Programs
Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED …
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Fungal & Algal Program
… approach allows for the identification of key functional traits that have direct applications in bioenergy … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …
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Offerings & Capabilities
Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three … expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, and further …
Learn more
Natural Prodcast Episode 10: A Primer on Genome Mining
… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … Catalog of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) The GEM catalog …
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Microbiome Data Science Team
Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from …
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Products
… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Special Initiatives & Programs
… and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …
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FICUS
… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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DNA Synthesis Program
DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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