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… of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), … strains ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional … resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from …

… not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … association with the potential like, what’s the ecological role? So there’s a lot there that the databases don’t have. …

… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We have … of these phage genes is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. …

… that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is … and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, …

… between host generations, researchers investigated the role that bacteria living within a host (endosymbionts) have on fungal host reproduction, and the reproductive genes they …

… MARCY: Sure. So my lab has really converged on the study of host-microbe chemistry. And the interactions– As much as we … what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are … anticancer or immune modulatory assays to see what role the compound might be playing in the system and then …

… The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New Investigator call, investigators may have existing …

… potential of candidate phyla  to decipher their possible roles in the environment, establish phylogenetic … E. A., Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …

… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. We started from that. Evolution doesn’t invent stuff …

… Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …

… understanding those broader environmental and ecological roles for secondary metabolites is what our mission is. … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … Catalog of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: …

… FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … projects as described above, but JGI portals will still host use-restricted data until the period of use-restriction …