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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … potential of candidate phyla  to decipher their possible roles in the environment, establish phylogenetic … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … Benefits sharing in the US National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife …
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Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … on increasing computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product …
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