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Natural Prodcast Episode 24: Jackie Winter and SMC
… them enough lately, but as always I have transcripts and show notes at naturalprodcast.com — I went a little overboard … with Christian, I started getting a little bit more into fungi and learning the differences of all the genetic … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it …
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User Programs
… Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF … more about our individual calls and other opportunities to work with the JGI …
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Secondary Metabolites Program
… the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their roles in …
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Frequently Asked Questions: Proposal Submission
… successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, … Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… sequences. As always, you’ll find transcripts and show notes with links to lots of other resources, especially … largely homology based, but then you’re using kind of a black box for the rule set. (Like antiSMASH, DeepBGC is an … Catalog of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I … Have been in the last several years figuring out how to adapt what we want to get out of the mass spectrometer to … working on that aspect and it’s quite active against some fungi. But we’re also really interested in distribution. So …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of … properties encoded within those genomes. Our aim is to more fully capture microbial and viral diversity, leading …
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Homepage
…   Gain access to omics technologies generating community data at zero cost … of University and Research; all specimens collected and fungi isolated are preserved in the Culture Collection of Fungi from Extreme Environment, the Italian National …
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Natural Prodcast Episode 5: Brad Moore
… Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … and have a great chat with him.  I kind of lost count of how many times Brad used the words “fun” and “magical” when … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …
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Natural Prodcast Episode 1: The Primer, Part 1
… natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your … talking about here. JGI, as an institution has recognized how important natural products are to understanding the … in a cell or a living creature that make it specialized or adapted to its environment. Chemical- chemistry-wise. So …
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Natural Prodcast Episode 19: Bill Fenical
… why the ocean was basically unexplored until the 70s, and how diving was the catalyst of that. We also talk about his … unpalatable. And we know that this is one of the major adaptations in the ocean. So it took a while to convince … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we …
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Natural Prodcast Episode 6: Marc Chevrette
… were, and wondering what those … what those were and how they function. So I worked on a team at the Broad that … like soil, which I’m working on now, this is a complete black box, we’re talking many, many orders of magnitude more … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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