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… He works with methylotrophs, which are a group of carbon-fixing bacteria that I would say are are still fairly … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … we also see with methanotrophs, which are also known to be symbionts of things like invertebrates like mussels. DAN: …

… he’s been leading an effort to build The Natural Product Atlas , or NPAtlas, a freely accessible natural products … America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … my perspective, JGI has a large database of biosynthetic gene clusters and biosynthetic gene cluster fragments, and …

… the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and …

… include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., … resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from …

… complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … threats in environmental samples. This work combines third generation sequencing and machine learning to enable fast, … A read simulation tool for generating synthetic sequencing data from genomic sequences …

… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great … Phylogenetic diversity estimates show that the gap between …

… while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … and C. Stephens. Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus …

… conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something …

… This process enables our users to explore the genetic makeup of microbial communities, shedding light on … metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a … whole genome sequences, providing a guide for measuring genetic distinctiveness of isolates.  …

… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … Genomics, there was a subsection of that called ABC, the Atlas of Biosynthetic Clusters. And at the time, it was a …

… Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … genomics existed. This is before we’re even thinking of genes and connecting genes to molecules, which is something … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …

… The CSP and FICUS calls are open to both domestic and … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release …