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Single Cell Research Group
… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): … N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat …
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Metabolomics Program
… of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for … … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled conditions, …
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Building Sphagnum Genomic Resources
The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling … and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and …
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Microbial Program
… of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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Environmental Genomics Group
Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. …
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Viral Genomics Group
… of green sulfur bacteria with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria … biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome …
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Frequently Asked Questions: Proposal Submission
… in. All proposals must be written in English. … The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release … sequencing project. … Utilization or transfer of any genetic resource may be covered by local, national or …
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DNA Synthesis Program
… the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … in advancing functional genomics, focusing on developing genetic systems that can address global energy and … & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … Inventory of Composable …
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Natural Prodcast Episode 10: A Primer on Genome Mining
ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … it’s like these molecules can just mediate so many kinds of interactions. And by understanding them, we can promote the … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog …
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User Programs
… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING …
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Plant Program
… major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … the Plant Program is advancing research into plant-microbiome interactions, focusing on how environmental …
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Special Initiatives & Programs
… and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted … robust high-yielding feedstock plants, using advanced genetic technology to accelerate the domestication of …
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