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… are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association … 10.1073/pnas.1907500116 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Postdocs: Margot …

The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to … expression platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to … coli and  Streptomyces lysate systems. Deciphering regulatory networks of secondary metabolite biosynthesis: We …

… these were not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then … about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, … platform work. And I think as we understand more about regulatory systems that will also help us predict which …

… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent …

… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: Cofounder & CTO, Oralta … … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …

… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … our audience, so the goal here then is to understand these regulatory mechanisms so that you can turn on the natural … based on what component they might be interested in like genomics, metabolomics, just basic chemistry, natural …

The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic …

… industry engagement through three primary routes:  … The CSP provides the scientific community at large with access …

… streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial Genomics. It’s one of the big data portals here at JGI. So …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …

The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … Program plays a central role in advancing functional genomics, focusing on developing genetic systems that can … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

… to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of …