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Plant Program
… delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, … trees as renewable energy feedstocks. It also tackles challenges posed by environmental change, focusing on plant … methods, the program equips researchers worldwide to tackle challenges in energy, agriculture, and environmental …
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Viral Genomics Group
… and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these … viruses on microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? … identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. …
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Natural Prodcast Episode 12: Nadine Ziemert
… what’s an example where that happened, where your view was challenged? NADINE ZIEMERT: Good question. I don’t remember … fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …
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Critical Assessment of Metagenome Interpretation: the second round of challenges
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Microbial Program
… These insights are crucial for addressing key environmental challenges, such as improving soil health, carbon … The IMG/M system serves as a community resource for comparative analysis and annotation … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …
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Natural Prodcast Episode 17: Cassandra Quave
… called The Plant Hunter , and I have to say it’s so awesome! For those of you want to understand more about natural products and drug discovery, or the challenges of academia, or if you want to understand what … copies of this and we were able to distribute it across the community. So that’s been used in supporting educational …
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Micro-Scale Applications Group
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DAS Tool for Genome Reconstruction from Metagenomes
… how individual microbes interact with each other in a community, and characterizing their individual … to address pressing energy and environmental scientific challenges. In Nature Microbiology , a team led by longtime … for the Critical Assessment of Metagenome Interpretation (CAMI) Challenge, a competition launched in 2015 by a …
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JGI Portals
… stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … The IMG/M system serves as a community resource for comparative analysis and annotation …
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How to Submit Sequencing Samples
… sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …
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Natural Prodcast Episode 6: Marc Chevrette
… than screening in the past, is in the types of pathogens or challenges where we’re putting these bugs and assays … Currie’s metagenomics research, enabled in part by JGI’s Community Science Program.] So that’s one example where we … always to talk to you. Thanks again. MARC: Yeah, awesome. Thanks so much. — DAN: I’m Dan Udwary, and you’ve …
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Mission
… and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and … and design biological functions that can address complex challenges in resource resilience and economic growth. The …
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