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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … resource for experimental protocols, media recipes, plasmid maps, useful software tools, and more. We didn’t discuss it …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … the metabolome into well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … amino acid out of solution and stick another amino acid or multiple other amino acids onto it to create a small …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the … to increase sequencing output while significantly lowering costs. Staff process samples, perform quality checks, and …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … use-restricted data. JGI proposals typically include multiple projects of different types which can span several …
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Joseph Spatafora
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … 39(4):499-509. Danko D. et al. (2021) A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … on that. And we are working on making a great big BiG-SLiCE map out of all this. BiG-SLiCE is a comparative analysis …
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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