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… been working in the Department of Energy. I really wasn’t known to them and they weren’t known to me. DAN: Sure. … are incredibly interested in this and have made tremendous advances in understanding how to harness the power of second … Yeah, so we put out a strategic plan in 2018. And in building that plan, we thought about secondary metabolites. …
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… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … Program harnesses cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …
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… I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … the pieces that attached to the other pieces, and sort of building out the puzzle from there to find that vein of … searches, but antiSMASH took, basically, all of the known things that were out there and created some good rule …
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… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … it didn’t. However – and this was a proposal on synthetic biology of engineering gene expression in bacteria – … forces instead of to make two competing tools. If we had known about your tool, Dan, we would have contacted you as …
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… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Cataloging Earth's microbial lineages through advanced genomic techniques and computational analysis: … in environmental samples: Our team develops and implements advanced methods for rapid detection and characterization of …
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… chemistry work, you really see that there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … we had to try and figure out what was there. Like, was it a known metabolite? Was it something new? And we could only do …
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… and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … and over that when we move into new chemical ecologies, new ecosystems, we find new chemistry. It worked in the marine … And I worked as an undergraduate for a pretty well-known guy, infamous person, actually. His name is Tomas …
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… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … always. But often proteobacteria. We find chemistry that’s known, or sometimes novel, but often known, and yet the … to that and what you guys do when you’re exploring your systems. Because I think the JGI has a little bit of a …
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… applications. The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project … engineering — to make them more user accessible Synthetic Biology Informatics Group : a team that develops data … Software Engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain …
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… for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe they don’t have available in their labs, … wider natural products community about what they need to advance their science, and what JGI can do to help that. So … go look that up and I couldn’t find the answer, so it’s not known as far as I could tell. ALISON: It could be bacterial …
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… and develops others providing complementary expertise to advance the science and serve as impact multipliers . The … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome …
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