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Natural Prodcast Episode 12: Nadine Ziemert
… that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot … the batch effect. Because they use different extraction methods and stuff like that. So we have a lot of data out …
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Micro-Scale Applications Group
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Synthetic Biology Informatics Group
… for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples …
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Natural Prodcast Episode 11: Marnix Medema
… the project was a mixture, initially, of experimental and computational work. And that it involves some of these crazy … about the project, and especially also about the more computational aspects of it, which I had found out during my … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on …
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Synthesis
… for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … Synthesis Platform Lead … …
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Special Initiatives & Programs
… to accelerate the domestication of perennials. CBI creates methods for high-yield production of advanced biofuels that … line of scientific inquiry by leveraging JGI experimental, computational and personnel resources for genomic research …
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Plant Program
By integrating cutting-edge technologies and data-driven methods, the program equips researchers worldwide to tackle … using deep-coverage RNA-seq analyzed in a consistant computational framework. It enables cross-species …
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Science Programs
… cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and …
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Partners
… plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research …
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Secondary Metabolites Program
… compounds. To support users, our efforts include developing computational tools for predicting biosynthetic gene … and determine their binding sites across multiple genomes. Computational prediction of heterologous expressability: We … host to express their BGC(s). This is based on extensive computational analyses of BGC size and complexity, BGC …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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