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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better … Clum, A. et al. (2021)  DOE JGI metagenome workflow …

… gene clusters in your genome and outputs them in the visual HTML file that you can browse. Dan Udwary: Yeah. And I think … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a …

… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … studying regulatory mechanisms of, first, E. coli and then Rhodobacter spheroides . And that got me really interested …

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Data Collective.        … Learn more about our work at the JGI:  …

The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …

The JGI’s Metabolomics Program works to uncover the roles of … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene …

… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic … individual calls and other opportunities to work with the JGI … User Support …

… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …