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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …

… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And … a Bacillus , there’s a flavobacterium, and there’s a pseudomonad. And they all interact with each other in …

… gene clusters in your genome and outputs them in the visual HTML file that you can browse. Dan Udwary: Yeah. And I think … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better … Clum, A. et al. (2021)  DOE JGI metagenome workflow …

With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a …

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Data Collective.        … Learn more about our work at the JGI:  …

… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be signed before work can …

The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …

The JGI’s Metabolomics Program works to uncover the roles of … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene …

Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … species level information as it’s come from the sources, GC-content, and other things. We don’t, say, have geographic …