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… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …

… Cataloging Earth's microbial lineages through advanced genomic techniques and … reveal new lineages and functional capabilities in the microbial world. … A.I., Mars Brisbin, M., Hu, S.K. et al. (2024) “ Missing microbial eukaryotes and misleading meta-omic conclusions …

… As a National User Facility, the JGI serves more than 2,500 users that predominately come … by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of …

… JGI Mission As a U.S. Department of Energy Office of Science … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale … crops, enhance biomass conversion efficiency, and discover microbial pathways for producing biofuels, biochemicals, and …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the Program …

… Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in … then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering the costs of the … them as part of the user calls. Please refer to the JGI CMM call available here, which includes the capabilities …

… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … – are usually really strange in terms of genomic content. So, for example, the actinomycetes that people … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …

… gene clusters in your genome and outputs them in the visual HTML file that you can browse. Dan Udwary: Yeah. And I think … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …

… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … species level information as it’s come from the sources, GC-content, and other things. We don’t, say, have geographic …

… statement of authorship are reproduced on all copies. The JGI is not responsible for the contents of any off-site pages referenced. …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … interactions, focusing on how environmental stress and microbial communities affect plant growth and productivity. …