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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial … is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled …

… for ecosystem functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …

… of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of … service returns a list of scored reaction and gene matches associated with metabolites and a list of scored metabolite …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

Uncovering associations between plant roots and fungi that can help or harm plant host health. The … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of the things I did want to … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …