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The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of …

The Fungal & Algal Program Advisory Committees is chartered by the … on the effective management and strategic objectives of the Program. The Committee serves as the Program's key external advisory panels and advocates of Program strategy, operations, and scientific relevance …

… tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling … quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) …

The User Support Analysis group provides computational analysis for new technology development and JGI user science … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …