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… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and … large-scale liquid handling automation, and sequence analysis. …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… The User Support Analysis group provides computational analysis for new technology development and JGI user science … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …