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The IMG group owns and maintains integral components of JGI’s … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … metagenome workflow . mSystems 6(3). 10.1128/MSYSTEMS.00804-20 Nayfach S et al.  A Genomic Catalog of Earth’s …

… and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of … Publications … For further details, please reach out to the Group Lead …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). … (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. Science. 346:698-9 (2014). …

Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … technology in order to enhance the quality of single-cell genomes and directly link functional information with …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … for uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions …

The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We … the development of highly customized analysis workflows for new product types, to the development of automated analysis …

… direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is … Team    … For further details, please reach out to the Group Lead …

Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support … Team    … For further details, please reach out to the Group Lead …

… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU …