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IMG Group
The IMG group owns and maintains integral components of JGI’s … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …
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Frequently Asked Questions: Proposal Submission
… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… 10 to the negative 9th. Picomolar, 10 to the negative 12th. DAN: Yeah. So very-- BETSY PARKINSON: Very, very-- … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … Understanding of Natural Product Induction Betsy's lab webpage and the page on the From Microbes to Medicines outreach …
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Natural Prodcast Episode 18: A CSP Primer
… show notes, which you can always access through JGI’s webpage at  naturalprodcast.com , along with transcripts and … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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Partnerships: Myco-Ed
… ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …
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Partnerships: Adopt-A-Genome
Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven … some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there … you go to the website, which is smc.jgi.doe.gov , the stats page is showing me that right now we have just over a …
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Natural Prodcast Episode 23: Aaron Puri
… bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that … was like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed …
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Publication Policy
Proposal DOIs can be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome … for your proposal using your proposal's WIP ID (ex. 503582). Click on the correct proposal name on your search …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that …
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Products
Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …
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