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Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an … about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like me, what a “haboob” …

Lake Mendota sits right next to the University of Wisconsin, … And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the …

This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the …

… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes … distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Microbiome Data Collective … First-of-its-kind integrated dataset enables genes-to-ecosystems research … Datasets … …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified using …

Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … Emory is where I did my undergraduate and I was a double major in Biology and I got introduced to this field of … in a Frontiers review paper. We tried to send this whole mega thing to Chemical Reviews , and they’re like, what? No, …

Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … comparative analysis, and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a wide array of fungal genomes, along …