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Sequencing Technologies & Products
… Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and … which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams … through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … challenge our understanding of viral complexity and evolution Our research focuses on discovering and characterizing …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … calls.   Please review the call language carefully to ensure that your request is appropriate for that call. Learn …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges. Maximizing soybean yield is critical to energy independence in the U.S. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … agents. We need treatments for humans. And it just so happens that bacteria make a lot of the kinds of molecules that …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … can’t destroy, we’ll pick that one. DAN UDWARY: That makes sense, yeah. ALISON NARAYAN: Because we want everyone in the … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … DAN UDWARY: I mean, I get that, too, so. But so I’m over sensitive to it sometimes. Well, welcome, Nadine. ALISON … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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