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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, … and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, …
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Sequencing Technologies
… molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and … They apply Lean Six Sigma practices to process optimization and development approaches, testing various platforms to see what works best for applications. The team works hand in hand with the Project Management …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … of Jerusalem , Israel Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: …
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Special Initiatives & Programs
Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … synthesis of fuels beyond ethanol. … The JGI Visiting Scientist Program is for faculty-level scientists who are …
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Natural Prodcast Episode 1: The Primer, Part 1
… “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … might be as critical or it might be as big a part of its life as metabolizing sugars, but it’s something that we …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … of if there’s anything kind of in my normal day-to-day life where there are 87,000 kinds. What fraction of those …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … associated with the chemistry department as well as the life sciences department. So welcome, Alison to today’s … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … And then I was talking at the same time also with some Australian colleague who’s working on structural biology of … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … biosynthetic gene clusters (BGCs) across all kingdoms of life. Tools are provided to display annotation data from …
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … for which, by genome sequencing, we know they are more proliferative than the enediyne we have isolated to date by the …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …
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