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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR …
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Natural Prodcast Episode 11: Marnix Medema
… of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome … and increasing its capabilities. It’s really important for software like this. Marnix Medema: Yeah, absolutely. This is … I think you should have the same attitude as a developer of software, because if a lot of users are misinterpreting the …
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Natural Prodcast Episode 9: Roger Linington
… and new developments in mass spectrometry hardware, software, new developments in NMR methods, ultra fast … huge opportunity there. But it requires developments on the software, on the technical side, and also developments in … biology. In recent years, his group has turned to some software development in order to build the tools that they …
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Synthesis
… … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software includes: … Plus: SynTrack and associated tools, …
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Natural Prodcast Episode 3: The Primer, Part 3
So DNA might be the installation disk you get for your software. A CD ROM. ALISON: I feel like you’re dating … DAN: Maybe DNA is the you know, the git repository for your software. ALISON: There we go. Okay.  DAN: So DNA is … computer analogy, though… DAN: So then RNA might be the software after it’s been installed on your hard drive. And …
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Microbiome Data Science Team
… of Metagenome Interpretation-a benchmark of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool … paper is here . Read the associated JGI news release here . Software we discussed, used for genome mining: AntiSMASH …
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Zhong Wang
… the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … on Google Scholar . … ALE , assembly quality evaluation software based on Bayesian statistics BioPig , a … framework MetaBAT , an automatic metagenome binning software … Education … Selected Publications … Software …
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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Bioboxes: standardised containers for interchangeable bioinformatics software
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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