Search

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. …

… brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … detailing the quantity & quality requirements for samples submitted to the DOE JGI. Plate-based Preparation … samples move through QC and into the library and sequencing pipelines.  You will receive automated emails as raw …

… technology in order to enhance the quality of single-cell genomes and directly link functional information with … quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to …

… addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic …

We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a … active groups of organisms within a community. Individual samples are fractionated using a density gradient, and each …

… the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … from a wide range of biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of experimental workflows and …

… … Plus: SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support   …

Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support …

Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …

… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … of how plants have naturally adapted to varied climate and soil conditions around the globe to identify genes to … high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool meraculous. …

… profiles from diverse biological and environmental samples using advanced liquid chromatography mass … for metabolites extracted from a variety of experimental samples, including organisms (e.g. microbes, fungi, plant), … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …